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A review of 28 free animal-tracking software applications: current features and limitations / Veronica Panadeiro in LabAnimal, Vol. 21 N°10 (October 2021)
[article]
Titre : A review of 28 free animal-tracking software applications: current features and limitations Type de document : texte imprimé Auteurs : Veronica Panadeiro ; Alvaro Rodriguez ; Jason Henry ; Donald Wlodkowic ; Magnus Andersson Année de publication : 2021 Article en page(s) : p. 16-31 Note générale : DOI: 10.1038/s41684-021-00811-1 Langues : Anglais (eng) Mots-clés : Algorithms Animals Behavior, Animal Software Résumé : Well-quantified laboratory studies can provide a fundamental understanding of animal behavior in ecology, ethology and ecotoxicology research. These types of studies require observation and tracking of each animal in well-controlled and defined arenas, often for long timescales. Thus, these experiments produce long time series and a vast amount of data that require the use of software applications to automate the analysis and reduce manual annotation. In this review, we examine 28 free software applications for animal tracking to guide researchers in selecting the software that might best suit a particular experiment. We also review the algorithms in the tracking pipeline of the applications, explain how specific techniques can fit different experiments, and finally, expose each approach's weaknesses and strengths. Our in-depth review includes last update, type of platform, user-friendliness, off- or online video acquisition, calibration method, background subtraction and segmentation method, species, multiple arenas, multiple animals, identity preservation, manual identity correction, data analysis and extra features. We found, for example, that out of 28 programs, only 3 include a calibration algorithm to reduce image distortion and perspective problems that affect accuracy and can result in substantial errors when analyzing trajectories and extracting mobility or explored distance. In addition, only 4 programs can directly export in-depth tracking and analysis metrics, only 5 are suited for tracking multiple unmarked animals for more than a few seconds and only 11 have been updated in the period 2019-2021. Permalink : ./index.php?lvl=notice_display&id=96698
in LabAnimal > Vol. 21 N°10 (October 2021) . - p. 16-31[article] A review of 28 free animal-tracking software applications: current features and limitations [texte imprimé] / Veronica Panadeiro ; Alvaro Rodriguez ; Jason Henry ; Donald Wlodkowic ; Magnus Andersson . - 2021 . - p. 16-31.
DOI: 10.1038/s41684-021-00811-1
Langues : Anglais (eng)
in LabAnimal > Vol. 21 N°10 (October 2021) . - p. 16-31
Mots-clés : Algorithms Animals Behavior, Animal Software Résumé : Well-quantified laboratory studies can provide a fundamental understanding of animal behavior in ecology, ethology and ecotoxicology research. These types of studies require observation and tracking of each animal in well-controlled and defined arenas, often for long timescales. Thus, these experiments produce long time series and a vast amount of data that require the use of software applications to automate the analysis and reduce manual annotation. In this review, we examine 28 free software applications for animal tracking to guide researchers in selecting the software that might best suit a particular experiment. We also review the algorithms in the tracking pipeline of the applications, explain how specific techniques can fit different experiments, and finally, expose each approach's weaknesses and strengths. Our in-depth review includes last update, type of platform, user-friendliness, off- or online video acquisition, calibration method, background subtraction and segmentation method, species, multiple arenas, multiple animals, identity preservation, manual identity correction, data analysis and extra features. We found, for example, that out of 28 programs, only 3 include a calibration algorithm to reduce image distortion and perspective problems that affect accuracy and can result in substantial errors when analyzing trajectories and extracting mobility or explored distance. In addition, only 4 programs can directly export in-depth tracking and analysis metrics, only 5 are suited for tracking multiple unmarked animals for more than a few seconds and only 11 have been updated in the period 2019-2021. Permalink : ./index.php?lvl=notice_display&id=96698 Réservation
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DisponibleMethods for measuring pain in laboratory animals. / Dustin M. Graham in LabAnimal-Europe, 04/16 (avril 2016)
[article]
Titre : Methods for measuring pain in laboratory animals. Type de document : texte imprimé Auteurs : Dustin M. Graham Année de publication : 2016 Article en page(s) : p. 23-25 Langues : Anglais (eng) Mots-clés : Animals Animals, Laboratory* Behavior, Animal Facial Expression Movement/physiology Nociception Pain/physiopathology Pain Measurement/methods* Résumé : Pain is one of the most important variables that members of the lab animal science community try to control and minimize, and it is a critical topic of research in clinical and basic sciences. Objective measurements of pain severity, especially in non-verbal animals that are used as disease models, can be difficult to obtain, but several developments in behavioral neuroscience are making the measurement of pain more consistent, automated and accurate. Permalink : ./index.php?lvl=notice_display&id=76497
in LabAnimal-Europe > 04/16 (avril 2016) . - p. 23-25[article] Methods for measuring pain in laboratory animals. [texte imprimé] / Dustin M. Graham . - 2016 . - p. 23-25.
Langues : Anglais (eng)
in LabAnimal-Europe > 04/16 (avril 2016) . - p. 23-25
Mots-clés : Animals Animals, Laboratory* Behavior, Animal Facial Expression Movement/physiology Nociception Pain/physiopathology Pain Measurement/methods* Résumé : Pain is one of the most important variables that members of the lab animal science community try to control and minimize, and it is a critical topic of research in clinical and basic sciences. Objective measurements of pain severity, especially in non-verbal animals that are used as disease models, can be difficult to obtain, but several developments in behavioral neuroscience are making the measurement of pain more consistent, automated and accurate. Permalink : ./index.php?lvl=notice_display&id=76497 Réservation
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